Package: epicmodel 0.2.0.9000
Felix Forster
epicmodel: Causal Modeling in Epidemiology
Create causal models for use in epidemiological studies, including sufficient-component cause models as introduced by Rothman (1976) <doi:10.1093/oxfordjournals.aje.a112335>.
Authors:
epicmodel_0.2.0.9000.tar.gz
epicmodel_0.2.0.9000.zip(r-4.5)epicmodel_0.2.0.9000.zip(r-4.4)epicmodel_0.2.0.9000.zip(r-4.3)
epicmodel_0.2.0.9000.tgz(r-4.5-any)epicmodel_0.2.0.9000.tgz(r-4.4-any)epicmodel_0.2.0.9000.tgz(r-4.3-any)
epicmodel_0.2.0.9000.tar.gz(r-4.5-noble)epicmodel_0.2.0.9000.tar.gz(r-4.4-noble)
epicmodel_0.2.0.9000.tgz(r-4.4-emscripten)epicmodel_0.2.0.9000.tgz(r-4.3-emscripten)
epicmodel.pdf |epicmodel.html✨
epicmodel/json (API)
NEWS
| # Install 'epicmodel' in R: |
| install.packages('epicmodel', repos = c('https://forsterepi.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/forsterepi/epicmodel/issues
Pkgdown site:https://forsterepi.github.io
- scc_rain - Rain example SCC model
- steplist_party - Birthday party example steplist
- steplist_rain - Rain example steplist
Last updated 3 months agofrom:31d14add85. Checks:8 OK. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Feb 10 2025 |
| R-4.5-win | OK | Feb 10 2025 |
| R-4.5-mac | OK | Feb 10 2025 |
| R-4.5-linux | OK | Feb 10 2025 |
| R-4.4-win | OK | Feb 10 2025 |
| R-4.4-mac | OK | Feb 10 2025 |
| R-4.3-win | OK | Feb 10 2025 |
| R-4.3-mac | OK | Feb 10 2025 |
Exports:are_sufficientcheck_steplistcreate_scceffect_sizeempty_sccempty_steplistexport_mechanismintervenelaunch_steplist_creatormechanismnecessary_causesnew_mechanismnew_sccnew_steplistplot_dagpreventremove_all_modulesremove_naremove_segmentsc_contain_stepsscc_cause_setsscc_to_dagshow_stepsuncheck_steplistvalidate_mechanismvalidate_sccvalidate_steplist
Dependencies:askpassassertthatbackportsbase64encbitbit64bootbslibcachemcheckmateclicliprcolorspacecommonmarkcpp11crayoncrosstalkcurldagittyDiagrammeRdigestdplyrDTevaluatefansifarverfastmapfontawesomefsgenericsggplot2gluegtablegtoolshighrhmshtmltoolshtmlwidgetshttpuvhttrigraphisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmeopensslpillarpkgconfigprettyunitsprogresspromisesprompterpurrrR6rappdirsRColorBrewerRcppreadrrlangrmarkdownrstudioapisassscalesshinyshinyalertshinyjsshinythemessourcetoolsspsUtilstringistringrsystibbletidyrtidyselecttinytextzdbutf8uuidV8vctrsviridisLitevisNetworkvroomwithrxfunxtableyaml
epicmodel
Rendered fromepicmodel.Rmdusingknitr::rmarkdownon Feb 10 2025.Last update: 2024-12-08
Started: 2024-10-31
Glossary
Rendered fromglossary.Rmdusingknitr::rmarkdownon Feb 10 2025.Last update: 2024-12-08
Started: 2024-10-31
Modules
Rendered frommodules.Rmdusingknitr::rmarkdownon Feb 10 2025.Last update: 2024-11-30
Started: 2024-10-31
SCC Models
Rendered fromscc.Rmdusingknitr::rmarkdownon Feb 10 2025.Last update: 2024-12-10
Started: 2024-10-31
Steplists
Rendered fromsteplist.Rmdusingknitr::rmarkdownon Feb 10 2025.Last update: 2024-11-30
Started: 2024-10-31
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Check if a certain set of component causes is suffcient | are_sufficient |
| Check 'epicmodel_steplist' class objects | check_steplist |
| Creating SCC models | create_scc |
| Determine standardized effect size of component causes | effect_size |
| Export mechanisms | export_mechanism |
| Explore effect of interventions | intervene |
| Launch steplist creator 'shiny' app | launch_steplist_creator |
| Investigate mechanisms | mechanism new_mechanism plot.epicmodel_mechanism print.epicmodel_mechanism validate_mechanism |
| Extract necessary causes | necessary_causes |
| SCC model objects | empty_scc new_scc plot.epicmodel_scc print.epicmodel_scc summary.epicmodel_scc validate_scc |
| Steplist objects | empty_steplist new_steplist plot.epicmodel_steplist plot.epicmodel_steplist_checked print.epicmodel_steplist print.epicmodel_steplist_checked summary.epicmodel_steplist summary.epicmodel_steplist_checked validate_steplist |
| Plot DAG | plot_dag |
| Explore effect of prevention | prevent |
| Remove all modules | remove_all_modules |
| Removing NA in 'icc' and 'outc' | remove_na |
| Remove segments | remove_segment |
| Do steps appear in sufficient causes? | sc_contain_steps |
| Extracting component causes from SCC model | scc_cause_sets |
| Rain example SCC model | scc_rain |
| Transform SCC to DAG | scc_to_dag |
| Show all steps of a SCC model | show_steps |
| Birthday party example steplist | steplist_party |
| Rain example steplist | steplist_rain |
| Unchecking 'epicmodel_steplist' objects | uncheck_steplist |